12/29/2023 0 Comments Download the new version ArcRunner![]() ![]() ![]() rw-r-r- 1 galaxy galaxy 158 Aug 11 11:09 runhello.sh rw-r-r- 1 galaxy galaxy 36 Aug 11 11:09 arcout1.txt rw-r-r- 1 galaxy galaxy 0 Aug 11 11:09 arc.out rw-r-r- 1 galaxy galaxy 0 Aug 11 11:09 arc.err rw-r-r- 1 galaxy galaxy 0 Aug 11 11:09 tool_stdout rw-r-r- 1 galaxy galaxy 59 Aug 11 11:09 arc_galaxy_runner]# ls -lhrt /storage/galaxy/data/jobs/000/2/outputs/ The same is true for the dev-version, however, upon finishing there is an error and the job is marked as failed in Galaxy, and there is no access to the uploaded output files (even though they are present in the job folder in galaxy): arc_galaxy_runner]# ls -lhrt /storage/galaxy/data/jobs/000/2/ĭrwxr-xr-x 3 galaxy galaxy 26 Aug 11 11:09 workingĭrwxr-xr-x 2 galaxy galaxy 44 Aug 11 11:09 outputs I can submit a job via a tool (currently a custom tool) from galaxy, the job runs as expected on the remote site, and the files after the job are don are uploaded into the correct galaxy folder once the job is done. The job-runner works as expected in release_23 of galaxy. (Note: seems my previous post got deleted, so reposting)ĭeveloping an new job runner on a test-galaxy server on almalinux 9 with the dev branch. ![]()
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